Savory Muffins with Cheese & Pesto – Quick & Easy Snack

Last updated on August 22, 2025

Do you ever find yourself reminiscing about those cozy afternoons spent in the kitchen, experimenting with flavors? I certainly do! I remember the first time I attempted to bake savory muffins—they were a crunchy, crumbly mess, and the kitchen looked like a flour bomb had exploded. But instead of giving up, I leaned into the chaos, knowing that each attempt brings its own delicious rewards. If you’re craving a savory treat that’s not just tasty but also friendly for blood sugar levels, then you’ve landed at the right place. Today, I’m excited to share my recipe for Savory Muffins with Cheese & Pesto. This recipe is simple, straightforward, and totally doable—even if this is your first baking endeavor.

Why I Love This Recipe of Savory Muffins with Cheese & Pesto

What makes this recipe special to me is its versatility. These muffins are not just a snack; they can serve as a wholesome breakfast, a savory lunch addition, or a delightful evening treat. I think about the times I’ve rushed out the door with one of these muffins in hand, knowing I’m fueling my body with something good. For beginner cooks, this recipe is approachable and forgiving. If you’ve ever felt intimidated by baking, I promise there’s a cozy charm to making these muffins. Plus, they come together in one bowl and don’t require any fancy tools—just your trusty muffin tin!

Beyond the ease, these muffins offer a comforting blend of flavors and textures. The combination of cheese, pesto, and vegetables creates an inviting aroma that fills the kitchen and reminds me that good food doesn’t have to be complicated. As someone who is health-conscious, these muffins allow me to indulge in a savory snack while keeping my blood sugar levels in check.

Ingredients You’ll Need for Savory Muffins with Cheese & Pesto

Let’s dive into the ingredients that make these muffins not only possible but delicious:

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Savory Muffins with Cheese & Pesto

Savory Muffins with Cheese & Pesto


  • Author: Sarah Mendez
  • Total Time: 33 minutes
  • Yield: 12 mini muffins 1x

Description

These Savory Muffins with Cheese & Pesto are fluffy, cheesy, and packed with flavor. Made with wholesome oat and almond flour, red pesto, cheddar, and a touch of roasted pepper, they’re the perfect grab-and-go snack, brunch item, or lunchbox treat.


Ingredients

Scale
  • 80 g oat flour (or blend rolled oats)
  • 60 g almond flour (ground almonds)
  • 1.5 tsp baking powder
  • 1/4 tsp bicarbonate of soda
  • 1/4 tsp sea salt
  • 1/4 tsp ground black pepper
  • 2 tbsp ground flaxseed
  • 3 large eggs
  • 90 ml milk of choice (almond, soy, or cow’s milk)
  • 2 tsp olive oil
  • 1 tbsp plain Greek yogurt
  • 1 tsp red pesto (heaped)
  • 60 g mature cheddar, grated
  • 40 g grated carrot
  • 40 g jarred roast pepper, finely chopped
  • 1 tbsp chives or spring onion, chopped

Optional Add-Ons + Substitutions:

  • Swap cheddar for feta or mozzarella
  • Replace carrot with zucchini or add spinach
  • Experiment with herbs (oregano, thyme, basil)
  • Ensure gluten-free oats + flour for a GF version

Instructions

  1. Preheat oven: Heat oven to 190°C (375°F) or 170°C fan. Grease or line a 12-hole mini muffin tin.
  2. Mix dry ingredients: In a large bowl, whisk together oat flour, almond flour, baking powder, bicarbonate of soda, salt, pepper, and flaxseed.
  3. Combine wet ingredients: In another bowl, beat eggs, then stir in milk, olive oil, Greek yogurt, and red pesto until smooth.
  4. Fold in add-ins: Stir in grated cheddar, carrot, roasted pepper, and chives.
  5. Combine mixtures: Add dry mixture to wet mixture. Stir gently until just combined—do not overmix.
  6. Fill muffin cups: Divide batter evenly into the tin, filling nearly to the top.
  7. Bake: Bake for 15–18 minutes, until golden and a skewer inserted in the center comes out clean.
  8. Cool: Let muffins cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.

Notes

  • Shortcut: Use pre-made pesto for ease.
  • Storage: Keep muffins in an airtight container for 2 days at room temp or up to 5 days in the fridge. They also freeze well for up to 1 month.
  • Serving idea: Pair with soup or salad for a light meal, or enjoy warm with extra pesto on top.
  • Prep Time: 15 minutes
  • Cook Time: 18 minutes
  • Category: Snack, Brunch, Side
  • Method: Baking
  • Cuisine: International

Nutrition

  • Serving Size: 1 muffin
  • Calories: 95
  • Sugar: 1g
  • Sodium: 140mg
  • Fat: 6g
  • Saturated Fat: 2g
  • Unsaturated Fat: 3.5g
  • Trans Fat: 0g
  • Carbohydrates: 6g
  • Fiber: 2g
  • Protein: 5g
  • Cholesterol: 45mg

Keywords: savory muffins, cheese and pesto muffins, healthy muffins, almond flour muffins, gluten free savory snack

Essentials

  • 80 g oat flour (or blend rolled oats): Oat flour is a great source of fiber and helps keep blood sugar levels stable. If you have rolled oats at home, blending them into flour is a simple shortcut!

  • 60 g almond flour (ground almonds): Almond flour adds a rich, nutty flavor and a boost of healthy fats. It’s lower in carbs compared to regular flour, making it a smart choice for blood sugar management.

  • 1.5 tsp baking powder: This leavening agent helps the muffins rise and become fluffy.

  • 1/4 tsp bicarbonate of soda: A small addition that works in tandem with baking powder for extra lift.

  • 1/4 tsp sea salt: This enhances the flavors of the other ingredients.

  • 1/4 tsp ground black pepper: Just a pinch adds a subtle warmth and depth to the muffins.

  • 2 tbsp ground flaxseed: A fantastic source of omega-3 fatty acids and fiber, flaxseed is also a great egg replacer if you’re vegan.

  • 3 large eggs: Eggs provide structure and moisture while adding protein to these muffins.

  • 90 ml milk of choice: Whether you prefer almond, soy, or regular cow’s milk, this ingredient adds moisture to create a lovely batter.

  • 2 tsp olive oil: A drizzle of good olive oil adds healthy fats and moisture to the mix.

  • 1 tbsp plain Greek yogurt: This adds creaminess and a bit of protein, making your muffins even more satisfying.

  • 1 tsp red pesto (heaped): The star of the show! Red pesto adds vibrant flavor and richness that can’t be beaten.

  • 60 g mature cheddar, grated: Rich and nutty, the cheese gives the muffins a delicious, savory kick.

  • 40 g grated carrot: Carrots add a subtle sweetness and moisture to the muffins—plus, you’re sneaking in some veggies!

  • 40 g jarred roast pepper, finely chopped: These bring a sweet and smoky flavor that pairs beautifully with the cheese and pesto.

  • 1 tbsp chives or spring onion, chopped: A sprinkle of these gives a fresh, oniony bite.

Optional Add-Ons + Substitutions

In addition to the core ingredients, here are a few optional add-ons you might like:

  • Other cheese varieties: Feel free to swap out mature cheddar for other cheeses like feta or mozzarella, depending on your taste.

  • Vegetable variations: Swap grated carrot for zucchini or add some spinach to the mix for a different spin!

  • Herbs and spices: Experiment with different herbs like oregano or thyme for additional aromatic flavors.

  • Gluten-free options: If you need a gluten-free muffin, simply ensure your oats are certified gluten-free and use a gluten-free flour blend.

Shortcuts

  • Pre-made Pesto: You can save time by using store-bought pesto instead of making your own from scratch.

Now that you have the ingredients, let’s get to the fun part—making these delectable muffins!

How to Make Savory Muffins with Cheese & Pesto Step-by-Step

Making these muffins is as easy as 1-2-3. Let’s get started!

Step 1: Preheat the Oven

Begin by preheating your oven to 190°C (or 170°C for fan-assisted ovens) which is about 375°F. If you’re using a mini muffin tin, either grab a silicone mold or lightly grease your 12-hole mini muffin tin with a bit of oil to ensure your muffins pop out easily.

Step 2: Mix Dry Ingredients

In a large mixing bowl, add the following dry ingredients:

  • Oat flour
  • Almond flour
  • Baking powder
  • Bicarbonate of soda
  • Sea salt
  • Ground black pepper
  • Ground flaxseed

Use a whisk to combine these ingredients well. This step is essential for ensuring your muffins rise evenly as they bake.

Step 3: Combine Wet Ingredients

In a separate bowl, beat the three large eggs. After they’re well beaten, stir in the 90 ml of milk, 2 teaspoons of olive oil, 1 tablespoon of plain Greek yogurt, and the heaped teaspoon of red pesto. Whisk these ingredients together until smoothly combined.

Step 4: Fold in the Add-Ins

Now it’s time to make it colorful! Fold in the grated mature cheddar, grated carrot, finely chopped roasted pepper, and chives or spring onion into your wet mixture. The goal here is to evenly distribute all those goodies for maximum flavor in each muffin.

Step 5: Combine Everything

Gently add the dry mixture to the wet batter. Stir it carefully, just until everything is combined. It’s important not to overmix—your muffins will become dense instead of fluffy!

Step 6: Fill Muffin Cups

Divide the batter evenly among the 12 muffin cups, filling them nearly to the top. You want them to rise high and have that beautiful, golden muffin top.

Step 7: Bake

Place the muffin tin in your preheated oven and bake for 15-18 minutes. You’ll know they’re done when they’re golden brown on top, and a skewer inserted into the center comes out clean.

Step 8: Cooling Time

Once they are baked to perfection, take them out and let them cool in the tin for about 5 minutes. After that, gently transfer them to a wire rack to cool completely.

There you have it! Your Savory Muffins with Cheese & Pesto are ready to enjoy.

Common Mistakes to Avoid

As you embark on your muffin-making adventure, here are a few common pitfalls to steer clear of:

Overmixing the Batter

One of the biggest mistakes novice bakers make is overmixing the batter. It’s tempting to really stir it until it’s ultra-smooth, but that will lead to denser muffins. Be gentle and mix just until everything is combined for that perfect fluffy texture.

Incorrect Oven Temperature

Baking at the wrong temperature can lead to muffins that either burn on the outside while staying raw inside or stubbornly refuse to rise. Make sure your oven is preheated and calibrated correctly. Every oven is different!

Skipping Ingredients

I know it can be tempting to skip ingredients based on what you have on hand, but remember that each element contributes to the overall flavor and texture. If possible, stick to the recipe to get the desired outcome.

Not using Fresh Ingredients

When it comes to baking, fresh ingredients make all the difference. Dried spices or aging flours can affect the taste and rising capacity of your muffins, so opt for the freshest pantry staples you can find!

Serving Suggestions for Savory Muffins with Cheese & Pesto

Now that you’ve baked a delicious batch, let’s consider how to enjoy these savory muffins:

With a Side Salad

Pair your muffins with a fresh side salad loaded with greens, cucumbers, and tomatoes. The refreshing salad complements the savory muffins and rounds out your meal beautifully.

On-the-Go Breakfast

These muffins make an excellent on-the-go breakfast. Pack a couple in a small container, and you’ll have a nutritious, satisfying start to your day!

As an Appetizer

Cut your muffins in half and serve them warm as an appetizer at your next gathering. They can be great finger foods, especially when accompanied by a light dip or spread.

With Soup

Hearty soups and savory muffins are a match made in heaven. Whether it’s a classic tomato soup or a rich vegetable bisque, these muffins serve as the perfect companion, soaking up all those delicious flavors.

Nutritional Values of Savory Muffins with Cheese & Pesto

These muffins not only taste great, but they also come packed with nutrients that can support a healthy lifestyle.

Balanced Macronutrients

Each muffin is made with wholesome ingredients that provide a balance of carbohydrates, proteins, and healthy fats. The oat and almond flour offers fiber and healthy fats, while the eggs and Greek yogurt add protein.

Low Glycemic Index

The ingredients in these muffins contribute to a lower glycemic index, which means they’ll help maintain steady blood sugar levels. They’re a smart choice if you’re looking to manage your blood sugar effectively.

Rich in Vitamins and Minerals

With added carrots and roasted peppers, these muffins are enriched with vitamins A and C, as well as potassium and magnesium. These nutrients play a vital role in overall health.

Satisfying Portion Size

With about 80 calories per muffin, you can enjoy a satisfying snack or breakfast without the guilt. They’re the perfect answer to that mid-afternoon craving without sending your blood sugar soaring.

Conclusion & Next Steps

In this cozy journey of baking, I hope you’ve learned that making Savory Muffins with Cheese & Pesto is easier than it looks! Not only can you customize them to suit your taste, but they also embody the warmth and comfort that home baking offers. Whether you’re a seasoned baker or just starting out, these muffins are a must-try.

So, what are you waiting for? Gather your ingredients and get ready to fill your kitchen with delightful aromas. Pledge to make this a staple recipe in your home.

Please make sure to leave a comment or share your experience with this recipe—your feedback means the world to me!

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FAQs About Savory Muffins with Cheese & Pesto

Can I use regular flour instead of oat flour?

While you can substitute regular flour for oat flour, keep in mind that the texture and nutritional profile will change. Oat flour is lower in carbs compared to regular flour, making it more suitable for blood sugar management.

How do I store the muffins?

Store your Savory Muffins with Cheese & Pesto in an airtight container at room temperature for up to three days. You can also refrigerate them for a week or freeze them for up to three months.

Can I make these muffins dairy-free?

Yes! To make them dairy-free, simply substitute the cheese with a dairy-free alternative and use non-dairy milk, such as almond or oat milk.

Is there a vegan option for this recipe?

While this recipe includes eggs and Greek yogurt, you can try using flax eggs as a substitute and plant-based yogurt instead to make them vegan.

Can I add different vegetables to the muffins?

Absolutely! Feel free to experiment with different vegetables such as spinach, zucchini, or even sundried tomatoes. The key is to keep a balance of wet and dry ingredients.

Now, get into your kitchen and embark on a savory muffin journey that will nourish your body and warm your soul. Happy baking!

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